episcanpy.api.pl.silhouette¶
- episcanpy.api.pl.silhouette(adata_name, cluster_annot, value='X_pca', metric='euclidean', key=None, xlabel=None, ylabel=None, title=None, size='large', alternative_plot=False, name_cluster=True, name_cluster_pos='left', palette=None, save=None)¶
Plot the product of tl.silhouette as a silhouette plot
- Parameters
- adata_name : AnnData object
- cluster_annot : observational variable corresponding to a cell clustering
- value : measure used to build the silhouette plot (X_pca, X_tsne, X_umap)
- metric : 'euclidean'
- key : specify name of precomputed silhouette scores if not standard
- Returns
Silhouette plot